This is what baffles me about the Pope's statement, where he implies God couldn't create the universe with the mere speaking of words. If God is limited, he is not God. He can make all the molecules and energy and all the things that make up life and the cosmos but requires a natural progression of time and change to make anything of them? Apparently Jesus also didn't work miracles and cheated his way to turning water to wine, because miracles are magic that a deity is incapable of doing. An unbelief in miracles and the power of God to perform the extraordinary would mean that Jesus also couldn't raise his body from the dead, making Christianity unnecessary if there is no resurrection after salvation.
If God can make the rules of the universe it should go without saying that he can bend and manipulate them in whatever way he pleases.
"Free will", "God is so wise that he [insert plothole in an overglorified way to justify]" etc etc
Omniscience and omnipotence are contradictory. Not amongst each other, but inside themselves. An omnipotent being has incredible contradictions stating how he can't be
truly omnipotent because being omnipotent ALSO implies being able to "be unable" to do something (That anedocte about the too-heavy-to-lift rock, y'know), and omniscience has contradictions concerning free will and the knowledge of the future.
Maybe that's what the Pope is getting at. You have to be truly faithful to overlook these things, and you have to be wise to accept what science has demonstrated.
Do I think this was a shot in the foot? Yeah, kinda... But the Pope needs to appease the people and "somewhat" say "Dudes, stop being silly. Look at this evidence and grow up".
It got to a point where no one can deny evolution or the Big Bang without looking like an ignorant or dishonest person, specially this year which many discoveries about the Big Bang have been made. I personally think that this Pope is being very wise.
(I told myself I'd not coment here. How wrong I was)