My avatar makes it pretty obvious to which one I prefer. I've always dug Simon's redesign. He looks fierce, with the yellow eyes and coyote fur. Even MercurySteam liked the design enough to evoke it in MoF.
Plus the arrange mode's music is pretty good, and the graphical overhauls like having the entire background of stage 3 changed to SotN-like quality and animating the sky in Stage 8. I just wish they went further, like touching up stage 6's graphics. The first part is good, but the bland green background leading up to the Simon doppelganger could've used some work.
I Some of those women were hand-gesturing at you to come and join them for a swim. Which I found creepy too.
I always thought they were trying to get you to help them, like the prisoners shouting for help to Simon in the dungeon stage. Except Simon just pimps on by. That's pretty stone cold of him.
Also bloodreign-kun, I've both a physical copy of Chronicles and cvx68k emulated, and I've never noticed a difference in difficulty. Though I did notice that the stair-climbing animation is better in the floppy disk version, and of course there's the voices of the dolls.